Breakfast Egg Muffins with Bacon

Featured in: Weeknight Dinners

These handheld breakfast muffins combine fluffy eggs with melted cheddar cheese, crispy bacon crumbles, and colorful diced bell peppers. Simply whisk eggs with milk and seasonings, stir in your fillings, and bake in a muffin tin until golden and set. The result is portable, protein-packed morning fuel that reheats beautifully throughout the week.

Updated on Sun, 01 Feb 2026 16:11:00 GMT
Golden-brown Breakfast Egg Muffins with melted cheddar, crisp bacon, and bell peppers served warm on a plate. Save
Golden-brown Breakfast Egg Muffins with melted cheddar, crisp bacon, and bell peppers served warm on a plate. | stellarcrust.com

Sunday mornings used to mean chaos in my kitchen until I started baking these little golden cups the night before. Now I wake up to the smell of reheating egg muffins instead of cracking shells with one eye open. My kids grab them on the way out the door, still warm and cheesy, and I finally get to drink my coffee while it's hot. It's a small victory, but it feels like magic every single time.

I first made these for a brunch potluck and watched them disappear in under ten minutes. A friend with two toddlers asked for the recipe twice because she forgot to write it down the first time. She texted me a week later saying her mornings were quieter now, and I knew exactly what she meant. Sometimes the simplest recipes end up being the ones people remember you for.

Ingredients

  • 6 large eggs: The backbone of these muffins, they puff up beautifully in the oven and hold everything together without getting rubbery if you don't overbake them.
  • 1/2 cup milk: This keeps the eggs tender and creamy instead of dense, and whole milk works better than skim if you have it.
  • 1/2 cup shredded cheddar cheese: Sharp cheddar gives the best flavor, and I've learned to shred it myself because pre-shredded doesn't melt quite as smoothly.
  • 1/2 cup diced bell peppers: I use whatever color looks brightest at the store, and they add a sweet crunch that balances the richness of the eggs.
  • 1/2 cup diced onions: Yellow or white onions work perfectly, and I dice them small so they soften completely and blend into every bite.
  • 1/2 cup cooked and crumbled bacon: Crispy bacon is key here, and I cook it until it's almost too crispy because it softens slightly in the oven.
  • 1/2 teaspoon salt, 1/4 teaspoon black pepper, 1/4 teaspoon garlic powder, 1/4 teaspoon paprika: These seasonings wake up the eggs without overpowering the other ingredients, and the paprika adds a subtle warmth I didn't expect to love.
  • Cooking spray or olive oil: Don't skip greasing the tin well, or you'll be scraping muffins out in sad little pieces like I did the first time.

Instructions

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Preheat and Prep Your Tin:
Set your oven to 350°F and give your muffin tin a generous coat of cooking spray, hitting the sides and bottoms of each cup. I learned the hard way that a light mist isn't enough.
Whisk the Egg Base:
Crack the eggs into a large bowl, pour in the milk, and whisk until the mixture turns pale yellow and slightly frothy. This step makes the muffins lighter and fluffier than if you just stir lazily.
Fold in the Fillings:
Add the cheese, bell peppers, onions, bacon, salt, pepper, garlic powder, and paprika, then stir gently until everything is evenly distributed. Try not to overmix or the eggs can get tough.
Fill the Cups:
Pour the egg mixture into each muffin cup, filling them about two-thirds full so they have room to puff up without spilling over. I use a liquid measuring cup with a spout to make this easier and less messy.
Bake Until Golden:
Slide the tin into the oven and bake for 18 to 20 minutes, watching for the tops to turn lightly golden and the centers to set. A toothpick poked in the middle should come out clean, not wet.
Cool and Release:
Let the muffins rest in the tin for 5 minutes, then run a butter knife around the edges to loosen them if they're sticking. They'll pop out much easier once they've cooled just a bit.
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Keeps spices within easy reach while cooking, helping you season dishes quickly during everyday meal prep.
Check price on Amazon
Hearty, handheld Breakfast Egg Muffins with fluffy eggs and colorful peppers, perfect for meal-prepping busy mornings. Save
Hearty, handheld Breakfast Egg Muffins with fluffy eggs and colorful peppers, perfect for meal-prepping busy mornings. | stellarcrust.com

The morning I brought these to my sister's house after she had her baby, she cried a little and said it was the first real breakfast she'd had in days. We reheated them in her microwave, ate them standing up in her kitchen, and she told me she felt human again. Food doesn't fix everything, but sometimes it helps more than we realize.

Storing and Reheating

These muffins keep beautifully in an airtight container in the fridge for up to five days, and I've never had one go bad before we finish them. For reheating, I microwave one muffin for about 30 seconds, and it comes out warm and fluffy like it just left the oven. If you're freezing them, wrap each one individually in plastic wrap, toss them all in a freezer bag, and they'll stay good for up to three months.

Swaps and Variations

I've made these with cooked sausage instead of bacon, and they're just as satisfying with a little more spice. If you want to keep them vegetarian, leave out the meat entirely and add a handful of spinach or sliced mushrooms. Feta cheese and sun-dried tomatoes make them feel fancy, and pepper jack adds a nice kick if your household likes heat.

Serving Suggestions

I love these muffins on their own, but they're even better with a dollop of salsa or a drizzle of hot sauce on top. Sometimes I'll serve them with a handful of fresh fruit or a simple side salad if I'm trying to make breakfast feel a little more complete.

  • Pair them with avocado slices and a sprinkle of sea salt for a creamy contrast.
  • Serve alongside roasted potatoes or hash browns if you're feeding a crowd.
  • Pack them in lunchboxes with cherry tomatoes and crackers for a protein-packed midday meal.
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Freshly baked Breakfast Egg Muffins stacked high, featuring cheddar cheese and savory bacon for a gluten-free breakfast. Save
Freshly baked Breakfast Egg Muffins stacked high, featuring cheddar cheese and savory bacon for a gluten-free breakfast. | stellarcrust.com

These little muffins have become my answer to almost every busy morning, and I hope they do the same for you. Make a batch, keep them close, and enjoy the kind of breakfast that feels homemade even when you're running late.

Recipe FAQs

Can I freeze these egg muffins?

Yes, these freeze exceptionally well. Cool completely, place in an airtight container or freezer bag, and freeze for up to 3 months. Thaw overnight in the refrigerator and reheat in the microwave for 30-60 seconds.

What vegetables work best in these muffins?

Bell peppers, onions, spinach, mushrooms, and diced tomatoes all work wonderfully. Sauté vegetables slightly before adding to remove excess moisture, which prevents soggy muffins.

How do I know when the muffins are done?

The muffins are ready when they're set and lightly golden on top, usually after 18-20 minutes at 350°F. A toothpick inserted in the center should come out clean, and they should spring back when gently touched.

Can I make these vegetarian?

Absolutely. Simply omit the bacon and add extra vegetables like spinach, mushrooms, or diced tomatoes. You can also incorporate vegetarian sausage crumbles or plant-based bacon alternatives.

How long do these last in the refrigerator?

Store cooled muffins in an airtight container in the refrigerator for up to 5 days. Reheat individual portions in the microwave for 30-45 seconds until warmed through.

What other cheeses can I use?

While sharp cheddar provides excellent flavor, try Swiss, pepper jack for spice, mozzarella for mild creaminess, or feta for a tangy Mediterranean twist. shredded melts most evenly.

Breakfast Egg Muffins with Bacon

Golden muffins with cheddar, bacon, and bell peppers. Perfect make-ahead breakfast for busy mornings.

Time to Prep
10 minutes
Time to Cook
20 minutes
Overall Time
30 minutes
Recipe by Logan Smith


Skill Level Easy

Cuisine American

Makes 6 Portions

Diet Preferences No Gluten, Reduced Carbs

What You'll Need

Eggs & Dairy

01 6 large eggs
02 1/2 cup whole milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers, mixed colors
02 1/2 cup diced onions

Proteins

01 1/2 cup cooked and crumbled bacon

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon paprika

For Greasing

01 Cooking spray or olive oil for muffin tin

How to Make It

Step 01

Preheat Oven: Preheat oven to 350°F.

Step 02

Prepare Muffin Tin: Grease a 12-cup muffin tin with cooking spray or olive oil, ensuring all cups are evenly coated.

Step 03

Combine Wet Ingredients: In a large mixing bowl, whisk together eggs and milk until well combined and slightly frothy.

Step 04

Mix All Components: Stir in cheddar cheese, bell peppers, onions, bacon, salt, black pepper, garlic powder, and paprika until evenly distributed.

Step 05

Fill Muffin Cups: Pour mixture into prepared muffin tin, filling each cup approximately two-thirds full.

Step 06

Bake Muffins: Bake for 18 to 20 minutes, until muffins are set and lightly golden. Insert a toothpick in the center; it should come out clean.

Step 07

Cool and Release: Remove from oven and allow to cool for 5 minutes. Carefully loosen muffins with a knife and remove from tin.

Step 08

Store or Serve: Serve warm immediately, or cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat in microwave before serving.

Tools You Need

  • 12-cup muffin tin
  • Large mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergy Info

Always review each ingredient for allergens, and ask a healthcare provider if you’re unsure.
  • Contains eggs
  • Contains milk and dairy products
  • May contain pork depending on protein selection
  • Check labels on sausage and add-ins for gluten cross-contamination

Nutrition Info (per portion)

This nutrition information serves as a guideline. For health concerns, talk to a professional.
  • Energy: 150
  • Total Fat: 10 g
  • Carbohydrates: 2 g
  • Proteins: 11 g